}
void displayedPhylogenyMightHaveChanged( final boolean recalc_longest_ext_node_info ) {
- if ( ( _mainpanel != null ) && ( _mainpanel.getCurrentPhylogeny() != null ) ) {
+ if ( ( _mainpanel != null )
+ && ( ( _mainpanel.getCurrentPhylogeny() != null ) && !_mainpanel.getCurrentPhylogeny().isEmpty() ) ) {
if ( getOptions().isShowOverview() ) {
_mainpanel.getCurrentTreePanel().updateOvSizes();
}
setActionWhenNodeClicked( NodeClickAction.SORT_DESCENDENTS );
}
else if ( action == _blast_item ) {
- if ( !Constants.__RELEASE && !Constants.__SNAPSHOT_RELEASE ) {
- setActionWhenNodeClicked( NodeClickAction.BLAST );
- }
+ setActionWhenNodeClicked( NodeClickAction.BLAST );
}
else if ( action == _open_tax_web_item ) {
setActionWhenNodeClicked( NodeClickAction.OPEN_TAX_WEB );
}
cb_index++;
}
+ if ( _configuration.doDisplayClickToOption( Configuration.blast ) ) {
+ _blast_item = cb_index;
+ addClickToOption( Configuration.blast, _configuration.getClickToTitle( Configuration.blast ) );
+ if ( default_option == Configuration.blast ) {
+ selected_index = cb_index;
+ }
+ cb_index++;
+ }
if ( getOptions().isEditable() ) {
if ( _configuration.doDisplayClickToOption( Configuration.cut_subtree ) ) {
_cut_subtree_item = cb_index;
}
cb_index++;
}
- if ( !Constants.__RELEASE && !Constants.__SNAPSHOT_RELEASE ) {
- if ( _configuration.doDisplayClickToOption( Configuration.blast ) ) {
- _blast_item = cb_index;
- addClickToOption( Configuration.blast, _configuration.getClickToTitle( Configuration.blast ) );
- if ( default_option == Configuration.blast ) {
- selected_index = cb_index;
- }
- cb_index++;
- }
- }
}
// Set default selection and its action
_click_to_combobox.setSelectedIndex( selected_index );
* Fit entire tree into window.
*/
void showWhole() {
- if ( _mainpanel.getCurrentScrollPane() == null ) {
+ if ( ( _mainpanel.getCurrentScrollPane() == null ) || _mainpanel.getCurrentTreePanel().getPhylogeny().isEmpty() ) {
return;
}
- displayedPhylogenyMightHaveChanged( false );
+ getCurrentTreePanel().updateSetOfCollapsedExternalNodes();
+ displayedPhylogenyMightHaveChanged( true );
_mainpanel.getCurrentTreePanel().updateOvSettings();
_mainpanel.getCurrentTreePanel().validate();
_mainpanel.validate();
node.setCollapse( false );
}
tp.resetNodeIdToDistToLeafMap();
- tp.updateSetOfCollapsedExternalNodes( t );
+ tp.updateSetOfCollapsedExternalNodes();
t.recalculateNumberOfExternalDescendants( false );
tp.setNodeInPreorderToNull();
t.hashIDs();