public abstract class MainFrame extends JFrame implements ActionListener {\r
\r
static final String USE_MOUSEWHEEL_SHIFT_TO_ROTATE = "In this display type, use mousewheel + Shift to rotate [or A and S]";\r
- static final String PHYLOXML_REF_TOOL_TIP = Constants.PHYLOXML_REFERENCE; //TODO //FIXME\r
+ static final String PHYLOXML_REF_TOOL_TIP = Constants.PHYLOXML_REFERENCE; //TODO //FIXME\r
static final String APTX_REF_TOOL_TIP = Constants.APTX_REFERENCE;\r
private static final long serialVersionUID = 3655000897845508358L;\r
final static Font menu_font = new Font( Configuration.getDefaultFontFamilyName(),\r
static final String TRIANGULAR_TYPE_CBMI_LABEL = "Triangular";\r
static final String CONVEX_TYPE_CBMI_LABEL = "Convex";\r
static final String ROUNDED_TYPE_CBMI_LABEL = "Rounded";\r
- static final String UNROOTED_TYPE_CBMI_LABEL = "Unrooted (alpha)"; //TODO\r
- static final String CIRCULAR_TYPE_CBMI_LABEL = "Circular (alpha)"; //TODO\r
+ static final String UNROOTED_TYPE_CBMI_LABEL = "Unrooted (alpha)"; //TODO\r
+ static final String CIRCULAR_TYPE_CBMI_LABEL = "Circular (alpha)"; //TODO\r
static final String OPTIONS_HEADER = "Options";\r
static final String SEARCH_SUBHEADER = "Search:";\r
static final String DISPLAY_SUBHEADER = "Display:";\r
static final String UNIFORM_CLADOGRAMS_LABEL = "Total Node Sum Dependent Cladograms";\r
static final String LABEL_DIRECTION_LABEL = "Radial Labels";\r
static final String LABEL_DIRECTION_TIP = "To use radial node labels in radial and unrooted display types";\r
- static final String SEARCH_WITH_REGEX_TIP = "To search using regular expressions (Java style). For example, use \"^B.+\\d{2,}$\" to search for everything starting with a B and ending with at least two digits.";\r
+ static final String SEARCH_WITH_REGEX_TIP = "To search using regular expressions (~Java/Perl syntax). For example, use \"^B.+\\d{2,}$\" to search for everything starting with a B and ending with at least two digits.";\r
static final String SCREEN_ANTIALIAS_LABEL = "Antialias";\r
static final String COLOR_LABELS_LABEL = "Colorize Labels Same as Parent Branch";\r
static final String BG_GRAD_LABEL = "Background Color Gradient";\r
JRadioButtonMenuItem _uniform_cladograms_rbmi;\r
JRadioButtonMenuItem _ext_node_dependent_cladogram_rbmi;\r
JCheckBoxMenuItem _color_by_taxonomic_group_cbmi;\r
- JCheckBoxMenuItem _show_scale_cbmi; //TODO fix me\r
+ JCheckBoxMenuItem _show_scale_cbmi; //TODO fix me\r
JCheckBoxMenuItem _show_overview_cbmi;\r
JCheckBoxMenuItem _show_domain_labels;\r
JCheckBoxMenuItem _show_annotation_ref_source;\r
// Handy pointers to child components:\r
MainPanel _mainpanel;\r
Container _contentpane;\r
- final LinkedList<TextFrame> _textframes = new LinkedList<TextFrame>(); ;\r
+ final LinkedList<TextFrame> _textframes = new LinkedList<TextFrame>(); ;\r
Configuration _configuration;\r
Options _options;\r
private Phylogeny _species_tree;\r
* has been selected by the user by clicking the "Return ..."\r
* menu item. This method is expected to be called from Javascript or\r
* something like it.\r
- * \r
+ *\r
* @return current external node data as String\r
*/\r
public String getCurrentExternalNodesDataBuffer() {\r