in progress

[jalview.git] / forester / java / src / org / forester / archaeopteryx / MainFrame.java

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrame.java b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
index 6cb8d5b..d1ad9b4 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrame.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrame.java
@@ -659,7 +659,7 @@ public abstract class MainFrame extends JFrame implements ActionListener {
         }
     }
 
-    Configuration getConfiguration() {
+    public Configuration getConfiguration() {
         return _configuration;
     }
 
@@ -794,7 +794,7 @@ public abstract class MainFrame extends JFrame implements ActionListener {
         _circular_type_cbmi.setSelected( false );
     }
 
-    void showWhole() {
+    public void showWhole() {
         _mainpanel.getControlPanel().showWhole();
     }
 
@@ -850,7 +850,9 @@ public abstract class MainFrame extends JFrame implements ActionListener {
                 && _abbreviate_scientific_names.isSelected() );
         options.setColorLabelsSameAsParentBranch( ( _color_labels_same_as_parent_branch != null )
                 && _color_labels_same_as_parent_branch.isSelected() );
-        options.setShowNodeBoxes( ( _show_node_boxes_cbmi != null ) && _show_node_boxes_cbmi.isSelected() );
+        //TODO FIXME ~~
+        //options.setShowNodeBoxes( ( _show_node_boxes_cbmi != null ) && _show_node_boxes_cbmi.isSelected() );
+      //TODO FIXME ~~
         if ( ( _non_lined_up_cladograms_rbmi != null ) && ( _non_lined_up_cladograms_rbmi.isSelected() ) ) {
             options.setCladogramType( CLADOGRAM_TYPE.NON_LINED_UP );
         }