Applet is going more functions.

[jalview.git] / forester / java / src / org / forester / archaeopteryx / MainFrameApplet.java

diff --git a/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java b/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java
index c6bd428..f5bfd5c 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java
+++ b/forester/java/src/org/forester/archaeopteryx/MainFrameApplet.java
@@ -87,6 +87,7 @@ public final class MainFrameApplet extends MainFrame {
         if ( getSpeciesTree() != null ) {
             buildAnalysisMenu();
         }
+        buildFileMenu();
         buildToolsMenu();
         buildViewMenu();
         buildFontSizeMenu();
@@ -114,8 +115,7 @@ public final class MainFrameApplet extends MainFrame {
                     _mainpanel.getCurrentTreePanel().calcParametersForPainting( _mainpanel.getCurrentTreePanel()
                                                                                         .getWidth(),
                                                                                 _mainpanel.getCurrentTreePanel()
-                                                                                        .getHeight(),
-                                                                                getOptions().isAllowFontSizeChange() );
+                                                                                        .getHeight() );
                 }
             }
         } );
@@ -189,6 +189,7 @@ public final class MainFrameApplet extends MainFrame {
                 MainFrame.setCycleNodeFillMenuItem( _cycle_node_fill_mi, getOptions() );
                 MainFrame.setCycleNodeShapeMenuItem( _cycle_node_shape_mi, getOptions() );
                 MainFrame.setTextNodeSizeMenuItem( _choose_node_size_mi, getOptions() );
+               
                 try {
                     getMainPanel().getControlPanel().setVisibilityOfDomainStrucureCB();
                     getMainPanel().getControlPanel().setVisibilityOfX();
@@ -246,14 +247,8 @@ public final class MainFrameApplet extends MainFrame {
         _options_jmenu
                 .add( _search_case_senstive_cbmi = new JCheckBoxMenuItem( MainFrame.SEARCH_CASE_SENSITIVE_LABEL ) );
         _options_jmenu.add( _search_whole_words_only_cbmi = new JCheckBoxMenuItem( MainFrame.SEARCH_TERMS_ONLY_LABEL ) );
-       
-        
-        
-        _options_jmenu
-        .add( _search_with_regex_cbmi = new JCheckBoxMenuItem( MainFrame.SEARCH_REGEX_LABEL ) );
-
-        
-        
+        _options_jmenu.add( _search_with_regex_cbmi = new JCheckBoxMenuItem( MainFrame.SEARCH_REGEX_LABEL ) );
+        _search_with_regex_cbmi.setToolTipText( MainFrame.SEARCH_WITH_REGEX_TIP );
         _options_jmenu.add( _inverse_search_result_cbmi = new JCheckBoxMenuItem( INVERSE_SEARCH_RESULT_LABEL ) );
         customizeJMenuItem( _choose_font_mi );
         customizeJMenuItem( _switch_colors_mi );
@@ -286,15 +281,7 @@ public final class MainFrameApplet extends MainFrame {
         customizeCheckBoxMenuItem( _show_overview_cbmi, getOptions().isShowOverview() );
         customizeCheckBoxMenuItem( _label_direction_cbmi,
                                    getOptions().getNodeLabelDirection() == NODE_LABEL_DIRECTION.RADIAL );
-        
-        
-        
         customizeCheckBoxMenuItem( _search_with_regex_cbmi, getOptions().isSearchWithRegex() );
-        
-        
-        
-        
-        
         customizeCheckBoxMenuItem( _search_whole_words_only_cbmi, getOptions().isMatchWholeTermsOnly() );
         customizeCheckBoxMenuItem( _inverse_search_result_cbmi, getOptions().isInverseSearchResult() );
         customizeCheckBoxMenuItem( _show_confidence_stddev_cbmi, getOptions().isShowConfidenceStddev() );