// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
top.add( category );
addSubelement( category, NODE_NAME, phylogeny_node.getName() );
if ( phylogeny_node.getDistanceToParent() != PhylogenyNode.DISTANCE_DEFAULT ) {
- addSubelement( category, NODE_BRANCH_LENGTH, ForesterUtil.FORMATTER_6.format( phylogeny_node
- .getDistanceToParent() ) );
+ addSubelement( category,
+ NODE_BRANCH_LENGTH,
+ ForesterUtil.FORMATTER_6.format( phylogeny_node.getDistanceToParent() ) );
}
if ( phylogeny_node.getBranchData().isHasConfidences() ) {
for( final PhylogenyData conf : phylogeny_node.getBranchData().getConfidences() ) {
}
if ( !phylogeny_node.isExternal() ) {
addSubelement( category, "Children", String.valueOf( phylogeny_node.getNumberOfDescendants() ) );
- addSubelement( category, "External children", String.valueOf( phylogeny_node.getAllExternalDescendants()
- .size() ) );
+ addSubelement( category,
+ "External children",
+ String.valueOf( phylogeny_node.getAllExternalDescendants().size() ) );
final SortedMap<Taxonomy, Integer> distinct_tax = PhylogenyMethods
.obtainDistinctTaxonomyCounts( phylogeny_node );
if ( distinct_tax != null ) {