import org.forester.io.parsers.nhx.NHXParser.TAXONOMY_EXTRACTION;
import org.forester.phylogeny.PhylogenyNode.NH_CONVERSION_SUPPORT_VALUE_STYLE;
-import org.forester.phylogeny.data.NodeData;
-import org.forester.phylogeny.data.NodeData.NODE_DATA;
+import org.forester.phylogeny.data.NodeDataField;
import org.forester.phylogeny.data.NodeVisualData;
import org.forester.phylogeny.data.NodeVisualData.NodeFill;
import org.forester.phylogeny.data.NodeVisualData.NodeShape;
private NodeVisualData.NodeShape _default_node_shape;
private short _default_node_shape_size;
private boolean _editable;
- private NODE_DATA _ext_desc_data_to_return;
+ private NodeDataField _ext_desc_data_to_return;
private boolean _graphics_export_using_actual_size;
private boolean _graphics_export_visible_only;
private boolean _internal_number_are_confidence_for_nh_parsing;
init();
}
- public NodeData.NODE_DATA getExtDescNodeDataToReturn() {
- return NodeData.NODE_DATA.DOMAINS_ALL;
- // TODO fix me
- // FIXME remove me
- // ~~~~~~
- //return _ext_desc_data_to_return;
+ public NodeDataField getExtDescNodeDataToReturn() {
+ return _ext_desc_data_to_return;
}
public boolean isAllowErrorsInDistanceToParent() {
_color_labels_same_as_parent_branch = color_labels_same_as_parent_branch;
}
- public void setExtDescNodeDataToReturn( final NODE_DATA ext_desc_data_to_return ) {
+ public void setExtDescNodeDataToReturn( final NodeDataField ext_desc_data_to_return ) {
_ext_desc_data_to_return = ext_desc_data_to_return;
}
_base_font = new Font( Configuration.getDefaultFontFamilyName(), Font.PLAIN, 10 );
_match_whole_terms_only = false;
_search_with_regex = false;
- _search_case_sensitive = true;
+ _search_case_sensitive = false;
_print_line_width = Constants.PDF_LINE_WIDTH_DEFAULT;
_show_overview = true;
_ov_placement = OVERVIEW_PLACEMENT_TYPE.UPPER_LEFT;
_color_labels_same_as_parent_branch = false;
_show_confidence_stddev = false;
_nh_conversion_support_value_style = NH_CONVERSION_SUPPORT_VALUE_STYLE.NONE;
- _ext_desc_data_to_return = NODE_DATA.UNKNOWN;
+ _ext_desc_data_to_return = NodeDataField.UNKNOWN;
_line_up_renderable_node_data = true;
_right_align_domains = false;
}