_number_of_digits_after_comma_for_branch_length_values = Constants.NUMBER_OF_DIGITS_AFTER_COMMA_FOR_BRANCH_LENGTH_VALUES_DEFAULT;
_number_of_digits_after_comma_for_confidence_values = Constants.NUMBER_OF_DIGITS_AFTER_COMMA_FOR_CONFIDENCE_VALUES_DEFAULT;
_nh_parsing_replace_underscores = false;
- _taxonomy_extraction = TAXONOMY_EXTRACTION.PFAM_STYLE_STRICT;
+ _taxonomy_extraction = TAXONOMY_EXTRACTION.NO;
_cladogram_type = Constants.CLADOGRAM_TYPE_DEFAULT;
_show_domain_labels = true;
setAbbreviateScientificTaxonNames( false );