git://source.jalview.org / jalview.git / blobdiff
? search:
summary | shortlog | log | commit | commitdiff | tree
raw | inline | side by side
in progress
[jalview.git] / forester / java / src / org / forester / archaeopteryx / TreeColorSet.java
diff --git a/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java b/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java
index b99a27b..2abad1d 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java
+++ b/forester/java/src/org/forester/archaeopteryx/TreeColorSet.java
@@ -6,7 +6,7 @@
 // Copyright (C) 2008-2010 Burnham Institute for Medical Research
 // Copyright (C) 2003-2010 Ethalinda K.S. Cannon
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -16,7 +16,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -34,15 +34,32 @@ import org.forester.util.ForesterUtil;
 /*
  * Maintains the color schemes and a set of colors for drawing a tree.
  */
-final class TreeColorSet {
-
-    static final String[]   SCHEME_NAMES   = { "Default", "Black", "Black & White", "Silver", "The Matrix",
-            "White & Blue", "Cyan", "Clockwork", "Blue", "Blue & White", "Neon" };
-    static final String[]   COLOR_FIELDS   = { "Background", "Background Gradient Bottom", "Sequence", "Taxonomy",
-            "Confidence", "Branch Length", "Branch", "Node Box", "Collapsed", "Matching Nodes", "Duplication",
-            "Speciation", "Duplication or Specation", "Domains", "Binary Domain Combinations", "Annotation", "Overview" };
+public final class TreeColorSet {
+
+    public static final String OVERVIEW                   = "Overview";
+    public static final String ANNOTATION                 = "Annotation";
+    public static final String BINARY_DOMAIN_COMBINATIONS = "Binary Domain Combinations";
+    public static final String DOMAINS                    = "Domains";
+    public static final String DUPLICATION_OR_SPECATION   = "Duplication or Specation";
+    public static final String SPECIATION                 = "Speciation";
+    public static final String DUPLICATION                = "Duplication";
+    public static final String MATCHING_NODES             = "Matching Nodes";
+    public static final String COLLAPSED                  = "Collapsed";
+    public static final String NODE_BOX                   = "Node Box";
+    public static final String BRANCH                     = "Branch";
+    public static final String BRANCH_LENGTH              = "Branch Length";
+    public static final String CONFIDENCE                 = "Confidence";
+    public static final String TAXONOMY                   = "Taxonomy";
+    public static final String SEQUENCE                   = "Sequence";
+    public static final String BACKGROUND_GRADIENT_BOTTOM = "Background Gradient Bottom";
+    public static final String BACKGROUND                 = "Background";
+    static final String[]      SCHEME_NAMES               = { "Default", "Black", "Black & White", "Silver",
+            "The Matrix", "White & Blue", "Cyan", "Clockwork", "Blue", "Blue & White", "Neon" };
+    static final String[]      COLOR_FIELDS               = { BACKGROUND, BACKGROUND_GRADIENT_BOTTOM, SEQUENCE,
+            TAXONOMY, CONFIDENCE, BRANCH_LENGTH, BRANCH, NODE_BOX, COLLAPSED, MATCHING_NODES, DUPLICATION, SPECIATION,
+            DUPLICATION_OR_SPECATION, DOMAINS, BINARY_DOMAIN_COMBINATIONS, ANNOTATION, OVERVIEW };
     // All the color sets; better be the same # of sets as there are names!
-    private final Color[][] _color_schemes = { { new Color( 0, 0, 0 ), // background_color
+    private final Color[][]    _color_schemes             = { { new Color( 0, 0, 0 ), // background_color
             new Color( 0, 100, 100 ), // background_color_gradient_bottom
             new Color( 220, 220, 220 ), // sequence  __ Default (same as Black)
             new Color( 180, 180, 180 ), // taxonomy
@@ -58,7 +75,7 @@ final class TreeColorSet {
             new Color( 123, 104, 238 ), // domains_color  
             new Color( 65, 105, 255 ), // binary_domain_combinations_color  
             new Color( 173, 255, 47 ) // annotation
-            , new Color( 130, 130, 130 )  // overview
+            , new Color( 130, 130, 130 )                 // overview
             }, { new Color( 0, 0, 0 ), // background_color
             new Color( 0, 255, 255 ), // background_color_gradient_bottom    
             new Color( 220, 220, 220 ), // sequence  __ Black
@@ -229,27 +246,27 @@ final class TreeColorSet {
             new Color( 27, 255, 0 ), // binary_domain_combinations_color
             new Color( 27, 255, 0 ) // annotation
             , new Color( 77, 77, 255 ) // ov
-            }                             };
+            }                                            };
     // Color schemes:
-    private int             _color_scheme;
+    private int                _color_scheme;
     // The drawing colors
-    private Color           seq_color;
-    private Color           taxonomy_color;
-    private Color           bootstrap_color;
-    private Color           branch_length_color;
-    private Color           branch_color;
-    private Color           box_color;
-    private Color           background_color;
-    private Color           background_color_gradient_bottom;
-    private Color           dup_box_color;
-    private Color           spec_box_color;
-    private Color           collapse_fill_color;
-    private Color           found_color;
-    private Color           duplication_or_specation_color;
-    private Color           domains_color;
-    private Color           binary_domain_combinations_color;
-    private Color           annotation_color;
-    private Color           ov_color;
+    private Color              seq_color;
+    private Color              taxonomy_color;
+    private Color              bootstrap_color;
+    private Color              branch_length_color;
+    private Color              branch_color;
+    private Color              box_color;
+    private Color              background_color;
+    private Color              background_color_gradient_bottom;
+    private Color              dup_box_color;
+    private Color              spec_box_color;
+    private Color              collapse_fill_color;
+    private Color              found_color;
+    private Color              duplication_or_specation_color;
+    private Color              domains_color;
+    private Color              binary_domain_combinations_color;
+    private Color              annotation_color;
+    private Color              ov_color;
 
     private TreeColorSet() {
         // Hidden constructor.