TAXONOMY, CONFIDENCE, BRANCH_LENGTH, BRANCH, NODE_BOX, COLLAPSED, MATCHING_NODES_A, MATCHING_NODES_B,
MATCHING_NODES_A_AND_B, DUPLICATION, SPECIATION, DUPLICATION_OR_SPECATION, DOMAIN_LABEL, DOMAIN_BASE,
BINARY_DOMAIN_COMBINATIONS, ANNOTATION, OVERVIEW };
- static final String[] SCHEME_NAMES = { "Default", "Black", "Black & White", "Silver", "Green",
+ static final String[] SCHEME_NAMES = { "Default", "Black", "Black & White", "Simple", "Silver", "Green",
"White & Blue", "Cyan", "Orange", "Blue", "Blue & White", "Neon" };
private int _color_scheme;
private final Color[][] _color_schemes = { { new Color( 0, 0, 0 ), // background_color
new Color( 0, 0, 0 ), // binary_domain_combinations_color
new Color( 0, 0, 0 ) // annotation
, new Color( 220, 220, 220 ) // ov
- }, { new Color( 0, 0, 0 ), // background_color
+ },
+
+
+
+
+ { new Color( 255, 255, 255 ), // background_color
+ new Color( 0, 255, 255 ), // background_color_gradient_bottom
+ new Color( 0, 0, 153 ), //sequence __ NEW
+ new Color( 0, 0, 102 ), // taxonomy
+ new Color( 0, 0, 204 ), // support
+ new Color( 0, 51, 255 ), // branch_length_color
+ new Color( 0, 0, 0 ), // branch_color
+ new Color( 0, 51, 255 ), // box_color
+ new Color( 0, 51, 255 ), // collapesed_fill_color
+ new Color( 0, 0, 255 ), // found_color 0
+ new Color( 0, 255, 0 ), // found_color 1
+ new Color( 0, 255, 255 ), // found_color 0 + 1
+ new Color( 102, 51, 255 ), // duplication_box_color
+ new Color( 153, 153, 153 ), // speciation_box_color
+ new Color( 255, 255, 0 ), // duplication_speciation_color
+ new Color( 51, 51, 51), // domain_label
+ new Color( 51, 51, 51 ), // domains_base
+ new Color( 0, 0, 153 ), // binary_domain_combinations_color
+ new Color( 0, 0, 153 ),// annotation
+ new Color( 51, 51, 51 ) // ov
+ } ,
+
+
+
+
+
+
+
+ { new Color( 0, 0, 0 ), // background_color
new Color( 0, 255, 255 ), // background_color_gradient_bottom
new Color( 220, 220, 220 ), // sequence __ Silver
new Color( 180, 180, 180 ), // taxonomy
// Hidden constructor.
}
+ public Color getDomainBaseColor() {
+ return domain_base_color;
+ }
+
+ public Color getDomainLabelColor() {
+ return domain_label_color;
+ }
+
+ private void setColorForDefault( final int i, final Color color ) {
+ _color_schemes[ 0 ][ i ] = color;
+ }
+
void cycleColorScheme() {
if ( getCurrentColorScheme() >= ( _color_schemes.length - 1 ) ) {
setColorSchema( 0 );
}
Color getBinaryDomainCombinationsColor() {
- if ( Constants.SPECIAL_CUSTOM ) {
+ if ( AptxConstants.SPECIAL_CUSTOM ) {
return new Color( 50, 50, 50 );
}
return binary_domain_combinations_color;
return box_color;
}
- Color getBranchColor() {
+ public Color getBranchColor() {
return branch_color;
}
return SCHEME_NAMES[ getCurrentColorScheme() ];
}
- public Color getDomainBaseColor() {
- return domain_base_color;
- }
-
- public Color getDomainLabelColor() {
- return domain_label_color;
- }
-
Color getDuplicationBoxColor() {
return dup_box_color;
}
return duplication_or_specation_color;
}
- Color getFoundColor0() {
+ public Color getFoundColor0() {
return found_color_0;
}
- Color getFoundColor0and1() {
+ public Color getFoundColor0and1() {
return found_color_0_and_1;
}
- Color getFoundColor1() {
+ public Color getFoundColor1() {
return found_color_1;
}
_color_scheme = color_scheme;
}
- private void setColorForDefault( final int i, final Color color ) {
- _color_schemes[ 0 ][ i ] = color;
- }
-
static TreeColorSet createInstance() {
final TreeColorSet tcs = new TreeColorSet();
tcs.setColorSchema( 0 );
tcs.setColorforDefault( field, color );
}
catch ( final IllegalArgumentException ex ) {
- ForesterUtil.printWarningMessage( Constants.PRG_NAME, ex.getMessage() );
+ ForesterUtil.printWarningMessage( AptxConstants.PRG_NAME, ex.getMessage() );
}
}
}