TAXONOMY, CONFIDENCE, BRANCH_LENGTH, BRANCH, NODE_BOX, COLLAPSED, MATCHING_NODES_A, MATCHING_NODES_B,
MATCHING_NODES_A_AND_B, DUPLICATION, SPECIATION, DUPLICATION_OR_SPECATION, DOMAIN_LABEL, DOMAIN_BASE,
BINARY_DOMAIN_COMBINATIONS, ANNOTATION, OVERVIEW };
- static final String[] SCHEME_NAMES = { "Default", "Black", "Black & White", "Silver", "Green",
+ static final String[] SCHEME_NAMES = { "Default", "Black", "Black & White", "Simple", "Silver", "Green",
"White & Blue", "Cyan", "Orange", "Blue", "Blue & White", "Neon" };
private int _color_scheme;
private final Color[][] _color_schemes = { { new Color( 0, 0, 0 ), // background_color
new Color( 0, 0, 0 ), // binary_domain_combinations_color
new Color( 0, 0, 0 ) // annotation
, new Color( 220, 220, 220 ) // ov
- }, { new Color( 0, 0, 0 ), // background_color
+ },
+
+
+
+
+ { new Color( 255, 255, 255 ), // background_color
+ new Color( 0, 255, 255 ), // background_color_gradient_bottom
+ new Color( 0, 0, 153 ), //sequence __ NEW
+ new Color( 0, 0, 102 ), // taxonomy
+ new Color( 0, 0, 204 ), // support
+ new Color( 0, 51, 255 ), // branch_length_color
+ new Color( 0, 0, 0 ), // branch_color
+ new Color( 0, 51, 255 ), // box_color
+ new Color( 0, 51, 255 ), // collapesed_fill_color
+ new Color( 0, 0, 255 ), // found_color 0
+ new Color( 0, 255, 0 ), // found_color 1
+ new Color( 0, 255, 255 ), // found_color 0 + 1
+ new Color( 102, 51, 255 ), // duplication_box_color
+ new Color( 153, 153, 153 ), // speciation_box_color
+ new Color( 255, 255, 0 ), // duplication_speciation_color
+ new Color( 51, 51, 51), // domain_label
+ new Color( 51, 51, 51 ), // domains_base
+ new Color( 0, 0, 153 ), // binary_domain_combinations_color
+ new Color( 0, 0, 153 ),// annotation
+ new Color( 51, 51, 51 ) // ov
+ } ,
+
+
+
+
+
+
+
+ { new Color( 0, 0, 0 ), // background_color
new Color( 0, 255, 255 ), // background_color_gradient_bottom
new Color( 220, 220, 220 ), // sequence __ Silver
new Color( 180, 180, 180 ), // taxonomy
return box_color;
}
- Color getBranchColor() {
+ public Color getBranchColor() {
return branch_color;
}
return duplication_or_specation_color;
}
- Color getFoundColor0() {
+ public Color getFoundColor0() {
return found_color_0;
}
- Color getFoundColor0and1() {
+ public Color getFoundColor0and1() {
return found_color_0_and_1;
}
- Color getFoundColor1() {
+ public Color getFoundColor1() {
return found_color_1;
}