private int _ov_y_position = 0;
private int _ov_y_start = 0;
private boolean _partition_tree = false;
+ private float _partition_threshold = 0;
private final boolean _phy_has_branch_lengths;
private Phylogeny _phylogeny = null;
private final Path2D.Float _polygon = new Path2D.Float();
final private TreeFontSet getTreeFontSet() {
return getMainPanel().getTreeFontSet();
}
+
+ final public float getThreshold() {
+ return _partition_threshold;
+ }
final private float getUrtFactor() {
return _urt_factor;
&& ( !node.isRoot() || ( _subtree_index > 0 ) ) );
}
- final boolean isCurrentTreeIsSubtree() {
+ public final boolean isCurrentTreeIsSubtree() {
return ( _subtree_index > 0 );
}
_clicked_x = e.getX();
if (!getPhylogeny().isEmpty()) {
- // should be calculated on each partition as the tree can theoretically
- // change in the meantime
+
PhylogenyNode furthestNode = PhylogenyMethods.calculateNodeWithMaxDistanceToRoot( _phylogeny );
_furthest_node_x = furthestNode.getXcoord();
_root_x = _phylogeny.getRoot().getXcoord();
paintCircularsLite( phy.getRoot(), phy, center_x, center_y, radius, g );
}
+ public final void paintFile( final Graphics2D g,
+ final boolean to_pdf,
+ final int graphics_file_width,
+ final int graphics_file_height,
+ final int graphics_file_x,
+ final int graphics_file_y ) {
+ paintPhylogeny(g,to_pdf,true,graphics_file_width,graphics_file_height,graphics_file_x,graphics_file_y);
+ }
final void paintPhylogeny( final Graphics2D g,
final boolean to_pdf,
final boolean to_graphics_file,
}
-// if (_partition_tree) {
-// g.setColor( Color.BLACK );
-// float threshold = (_clicked_x - _root_x) / (_furthest_node_x - _root_x);
-// drawLine( _clicked_x, 0, _clicked_x, getHeight(),g);
-//
-// _partition_tree = false;
-// }
+ if (_partition_tree) {
+ g.setColor( Color.BLACK );
+ _partition_threshold = (_clicked_x - _root_x) / (_furthest_node_x - _root_x);
+ drawLine( _clicked_x, 0, _clicked_x, getHeight(),g);
+ _partition_tree = false;
+ }
}
-
final void recalculateMaxDistanceToRoot() {
_max_distance_to_root = PhylogenyMethods.calculateMaxDistanceToRoot( getPhylogeny() );