JAL-2852 added framework for saving as EPS file

[jalview.git] / forester / java / src / org / forester / archaeopteryx / TreePanel.java

diff --git a/forester/java/src/org/forester/archaeopteryx/TreePanel.java b/forester/java/src/org/forester/archaeopteryx/TreePanel.java
index 048c9a3..6321315 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/TreePanel.java
+++ b/forester/java/src/org/forester/archaeopteryx/TreePanel.java
@@ -258,7 +258,7 @@ public final class TreePanel extends JPanel implements ActionListener, MouseWhee
                                                                                                                         2.0f },
                                                                                                                 0f );
     private static final double           TWO_PI                                             = 2 * Math.PI;
-    private final static int              WIGGLE                                             = 2;
+    private final static int              WIGGLE                                             = 3;
     private static final String           SHOW_ONLY_THIS_CONF_TYPE                           = null;                                                     //TODO remove me
     HashMap<Long, Short>                  _nodeid_dist_to_leaf                               = new HashMap<Long, Short>();
     final private Arc2D                   _arc                                               = new Arc2D.Double();
@@ -5025,7 +5025,7 @@ public final class TreePanel extends JPanel implements ActionListener, MouseWhee
      * @param y
      * @return pointer to the node at x,y, null if not found
      */
-    final PhylogenyNode findNode( final int x, final int y ) {
+    public final PhylogenyNode findNode( final int x, final int y ) {
         if ( ( _phylogeny == null ) || _phylogeny.isEmpty() ) {
             return null;
         }
@@ -5063,15 +5063,15 @@ public final class TreePanel extends JPanel implements ActionListener, MouseWhee
         return _domain_structure_e_value_thr_exp;
     }
 
-    final Set<Long> getFoundNodes0() {
+    public final Set<Long> getFoundNodes0() {
         return _found_nodes_0;
     }
 
-    final Set<Long> getFoundNodes1() {
+    public final Set<Long> getFoundNodes1() {
         return _found_nodes_1;
     }
 
-    List<PhylogenyNode> getFoundNodesAsListOfPhylogenyNodes() {
+    public List<PhylogenyNode> getFoundNodesAsListOfPhylogenyNodes() {
         final List<PhylogenyNode> additional_nodes = new ArrayList<PhylogenyNode>();
         if ( getFoundNodes0() != null ) {
             for( final Long id : getFoundNodes0() ) {
@@ -5989,11 +5989,11 @@ public final class TreePanel extends JPanel implements ActionListener, MouseWhee
         _current_external_nodes_data_buffer = sb;
     }
 
-    final void setFoundNodes0( final Set<Long> found_nodes ) {
+    public final void setFoundNodes0( final Set<Long> found_nodes ) {
         _found_nodes_0 = found_nodes;
     }
 
-    final void setFoundNodes1( final Set<Long> found_nodes ) {
+    public final void setFoundNodes1( final Set<Long> found_nodes ) {
         _found_nodes_1 = found_nodes;
     }