added a close button

[jalview.git] / forester / java / src / org / forester / archaeopteryx / tools / AncestralTaxonomyInferrer.java

diff --git a/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java b/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
index a42d1ec..fa159b4 100644 (file)
--- a/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
+++ b/forester/java/src/org/forester/archaeopteryx/tools/AncestralTaxonomyInferrer.java
@@ -21,7 +21,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.archaeopteryx.tools;
 
@@ -31,25 +31,26 @@ import javax.swing.JOptionPane;
 
 import org.forester.analysis.AncestralTaxonomyInference;
 import org.forester.analysis.AncestralTaxonomyInferenceException;
+import org.forester.archaeopteryx.MainFrame;
 import org.forester.archaeopteryx.MainFrameApplication;
 import org.forester.archaeopteryx.TreePanel;
 import org.forester.phylogeny.Phylogeny;
-import org.forester.ws.uniprot.UniProtWsTools;
+import org.forester.ws.seqdb.SequenceDbWsTools;
 
 public class AncestralTaxonomyInferrer extends RunnableProcess {
 
     private final Phylogeny            _phy;
-    private final MainFrameApplication _mf;
+    private final MainFrame _mf;
     private final TreePanel            _treepanel;
 
-    public AncestralTaxonomyInferrer( final MainFrameApplication mf, final TreePanel treepanel, final Phylogeny phy ) {
+    public AncestralTaxonomyInferrer( final MainFrame mf, final TreePanel treepanel, final Phylogeny phy ) {
         _phy = phy;
         _mf = mf;
         _treepanel = treepanel;
     }
 
     public static String getBaseUrl() {
-        return UniProtWsTools.BASE_UNIPROT_URL;
+        return SequenceDbWsTools.BASE_UNIPROT_URL;
     }
 
     private void inferTaxonomies() {