private final List<String> _warnings = new ArrayList<>();
private int _lec_ext_nodes = 0;
private int _p_ext_nodes = 0;
- private String _greatest_common_clade_confidence = "";
- private String _greatest_common_clade_confidence_up = "";
- private String _greatest_common_clade_confidence_down = "";
+ private String _greatest_common_clade_subtree_confidence = "";
+ private String _greatest_common_clade_subtree_confidence_up = "";
+ private String _greatest_common_clade_subtree_confidence_down = "";
void addWarning( final String warning ) {
_warnings.add( warning );
_greatest_common_prefix_down = greatest_common_prefix_down;
}
- void setGreatestCommonCladeConfidence( final String greatest_common_clade_confidence ) {
- _greatest_common_clade_confidence = greatest_common_clade_confidence;
+ void setGreatestCommonCladeSubtreeConfidence( final String greatest_common_clade_confidence ) {
+ _greatest_common_clade_subtree_confidence = greatest_common_clade_confidence;
}
- void setGreatestCommonCladeUpConfidence( final String greatest_common_clade_confidence_up ) {
- _greatest_common_clade_confidence_up = greatest_common_clade_confidence_up;
+ void setGreatestCommonCladeUpSubtreeConfidence( final String greatest_common_clade_confidence_up ) {
+ _greatest_common_clade_subtree_confidence_up = greatest_common_clade_confidence_up;
}
- void setGreatestCommonCladeDownConfidence( final String greatest_common_clade_confidence_down ) {
- _greatest_common_clade_confidence_down = greatest_common_clade_confidence_down;
+ void setGreatestCommonCladeDownSubtreeConfidence( final String greatest_common_clade_confidence_down ) {
+ _greatest_common_clade_subtree_confidence_down = greatest_common_clade_confidence_down;
}
public String getGreatestCommonPrefix() {
return _greatest_common_prefix_down;
}
- public String getGreatestCommonCladeConfidence() {
- return _greatest_common_clade_confidence;
+ public String getGreatestCommonCladeSubtreeConfidence() {
+ return _greatest_common_clade_subtree_confidence;
}
- public String getGreatestCommonCladeUpConfidence() {
- return _greatest_common_clade_confidence_up;
+ public String getGreatestCommonCladeUpSubtreeConfidence() {
+ return _greatest_common_clade_subtree_confidence_up;
}
- public String getGreatestCommonCladeDownConfidence() {
- return _greatest_common_clade_confidence_down;
+ public String getGreatestCommonCladeDownSubtreeConfidence() {
+ return _greatest_common_clade_subtree_confidence_down;
}
public List<String> getWarnings() {