// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.evoinference.parsimony;
private Map<PhylogenyNode, BinaryStates> getStatesForCharacter( final Phylogeny p,
final CharacterStateMatrix<BinaryStates> matrix,
final int character_index ) {
- final Map<PhylogenyNode, BinaryStates> states = new HashMap<PhylogenyNode, BinaryStates>( matrix
- .getNumberOfIdentifiers() );
+ final Map<PhylogenyNode, BinaryStates> states = new HashMap<PhylogenyNode, BinaryStates>( matrix.getNumberOfIdentifiers() );
for( int indentifier_index = 0; indentifier_index < matrix.getNumberOfIdentifiers(); ++indentifier_index ) {
final BinaryStates state = matrix.getState( indentifier_index, character_index );
if ( state == null ) {