// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
else if ( my_s.equals( GOSLIM_CANDIDA_STR ) ) {
_type = Type.GOSLIM_CANDIDA;
}
+ else if ( my_s.equals( GOSLIM_ASPERGILLUS_STR ) ) {
+ _type = Type.GOSLIM_ASPERGILLUS;
+ }
else if ( my_s.equals( GOSLIM_PLANT_STR ) ) {
_type = Type.GOSLIM_PLANT;
}
else if ( my_s.equals( GOSLIM_POMBE_STR ) ) {
_type = Type.GOSLIM_POMBE;
}
+ else if ( my_s.equals( HIGH_LEVEL_ANNOTATION_QC_STR ) ) {
+ _type = Type.HIGH_LEVEL_ANNOTATION_QC;
+ }
+ else if ( my_s.equals( UNVETTED_STR ) ) {
+ _type = Type.UNVETTED;
+ }
+ else if ( my_s.equals( MF_NEEDS_REVIEW_STR ) ) {
+ _type = Type.MF_NEEDS_REVIEW;
+ }
else {
throw new IllegalArgumentException( "unknown GO subset type: " + my_s );
}
_type = type;
}
+ @Override
public int compareTo( final GoSubset sub ) {
return getType().compareTo( sub.getType() );
}
}
}
+ @Override
public Type getType() {
return _type;
}
case GOSLIM_PLANT:
sb.append( GOSLIM_PLANT_STR );
break;
+ case GOSLIM_ASPERGILLUS:
+ sb.append( GOSLIM_ASPERGILLUS_STR );
+ break;
case GOSLIM_YEAST:
sb.append( GOSLIM_YEAST_STR );
break;
case GOSLIM_POMBE:
sb.append( GOSLIM_POMBE_STR );
break;
+ case MF_NEEDS_REVIEW:
+ sb.append( MF_NEEDS_REVIEW_STR );
+ break;
+ case HIGH_LEVEL_ANNOTATION_QC:
+ sb.append( HIGH_LEVEL_ANNOTATION_QC_STR );
+ break;
+ case UNVETTED:
+ sb.append( UNVETTED_STR );
+ break;
default:
new AssertionError( "unknown type: " + getType() );
}