in progress

[jalview.git] / forester / java / src / org / forester / go / BasicGoSubset.java

diff --git a/forester/java/src/org/forester/go/BasicGoSubset.java b/forester/java/src/org/forester/go/BasicGoSubset.java
index 19d20ed..dc63b52 100644 (file)
--- a/forester/java/src/org/forester/go/BasicGoSubset.java
+++ b/forester/java/src/org/forester/go/BasicGoSubset.java
@@ -5,7 +5,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -15,7 +15,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -55,6 +55,12 @@ public class BasicGoSubset implements GoSubset {
         else if ( my_s.equals( GOSLIM_POMBE_STR ) ) {
             _type = Type.GOSLIM_POMBE;
         }
+        else if ( my_s.equals( HIGH_LEVEL_ANNOTATION_QC_STR ) ) {
+            _type = Type.HIGH_LEVEL_ANNOTATION_QC;
+        }
+        else if ( my_s.equals( UNVETTED_STR ) ) {
+            _type = Type.UNVETTED;
+        }
         else {
             throw new IllegalArgumentException( "unknown GO subset type: " + my_s );
         }
@@ -64,6 +70,7 @@ public class BasicGoSubset implements GoSubset {
         _type = type;
     }
 
+    @Override
     public int compareTo( final GoSubset sub ) {
         return getType().compareTo( sub.getType() );
     }
@@ -85,6 +92,7 @@ public class BasicGoSubset implements GoSubset {
         }
     }
 
+    @Override
     public Type getType() {
         return _type;
     }