Applet is going more functions.

[jalview.git] / forester / java / src / org / forester / go / PfamToGoMapping.java

diff --git a/forester/java/src/org/forester/go/PfamToGoMapping.java b/forester/java/src/org/forester/go/PfamToGoMapping.java
index 93ee62a..7d9056b 100644 (file)
--- a/forester/java/src/org/forester/go/PfamToGoMapping.java
+++ b/forester/java/src/org/forester/go/PfamToGoMapping.java
@@ -5,7 +5,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -15,24 +15,22 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.go;
 
-import org.forester.surfacing.DomainId;
-
 public class PfamToGoMapping implements Mapping {
 
-    private final DomainId _pfam_domain_id;
-    private final GoId     _go_id;
+    private final String _pfam_domain_id;
+    private final GoId   _go_id;
 
-    public PfamToGoMapping( final DomainId pfam_domain_id, final GoId go_id ) {
+    public PfamToGoMapping( final String pfam_domain_id, final GoId go_id ) {
         _pfam_domain_id = pfam_domain_id;
         _go_id = go_id;
     }
@@ -42,13 +40,13 @@ public class PfamToGoMapping implements Mapping {
         if ( this == m ) {
             return 0;
         }
-        return getKey().compareTo( ( DomainId ) m.getKey() );
+        return getKey().compareTo( ( String ) m.getKey() );
     }
 
     /**
      * Based on key and value.
-     * 
-     * 
+     *
+     *
      */
     @Override
     public boolean equals( final Object o ) {
@@ -69,7 +67,7 @@ public class PfamToGoMapping implements Mapping {
     }
 
     @Override
-    public DomainId getKey() {
+    public String getKey() {
         return _pfam_domain_id;
     }