import java.util.Map;
import java.util.SortedSet;
-import org.forester.protein.DomainId;
import org.forester.util.ForesterUtil;
public class TestGo {
private static boolean testPfamToGoMapping() {
try {
- final PfamToGoMapping pg0 = new PfamToGoMapping( new DomainId( "A" ), new GoId( "GO:0000001" ) );
- final PfamToGoMapping pg1 = new PfamToGoMapping( new DomainId( "A" ), new GoId( "GO:0000001" ) );
- final PfamToGoMapping pg2 = new PfamToGoMapping( new DomainId( "B" ), new GoId( "GO:0000001" ) );
- final PfamToGoMapping pg3 = new PfamToGoMapping( new DomainId( "A" ), new GoId( "GO:0000002" ) );
- final PfamToGoMapping pg4 = new PfamToGoMapping( new DomainId( "B" ), new GoId( "GO:0000002" ) );
+ final PfamToGoMapping pg0 = new PfamToGoMapping( "A", new GoId( "GO:0000001" ) );
+ final PfamToGoMapping pg1 = new PfamToGoMapping( "A", new GoId( "GO:0000001" ) );
+ final PfamToGoMapping pg2 = new PfamToGoMapping( "B", new GoId( "GO:0000001" ) );
+ final PfamToGoMapping pg3 = new PfamToGoMapping( "A", new GoId( "GO:0000002" ) );
+ final PfamToGoMapping pg4 = new PfamToGoMapping( "B", new GoId( "GO:0000002" ) );
if ( !pg0.equals( pg0 ) ) {
return false;
}
final PfamToGoMapping m5 = mappings.get( 5 );
final PfamToGoMapping m424 = mappings.get( 424 );
final PfamToGoMapping m425 = mappings.get( 425 );
- if ( !m0.getKey().equals( new DomainId( "7tm_1" ) ) ) {
+ if ( !m0.getKey().equals( "7tm_1" ) ) {
return false;
}
if ( !m0.getValue().equals( new GoId( "GO:0001584" ) ) ) {
return false;
}
- if ( m0.getKey().equals( new DomainId( "7tm_x" ) ) ) {
+ if ( m0.getKey().equals( "7tm_x" ) ) {
return false;
}
if ( m0.getValue().equals( new GoId( "GO:0001585" ) ) ) {
return false;
}
- if ( !m1.getKey().equals( new DomainId( "7tm_1" ) ) ) {
+ if ( !m1.getKey().equals( "7tm_1" ) ) {
return false;
}
if ( !m1.getValue().equals( new GoId( "GO:0007186" ) ) ) {
return false;
}
- if ( !m2.getKey().equals( new DomainId( "7tm_1" ) ) ) {
+ if ( !m2.getKey().equals( "7tm_1" ) ) {
return false;
}
if ( !m2.getValue().equals( new GoId( "GO:0016021" ) ) ) {
return false;
}
- if ( !m3.getKey().equals( new DomainId( "7tm_2" ) ) ) {
+ if ( !m3.getKey().equals( "7tm_2" ) ) {
return false;
}
if ( !m3.getValue().equals( new GoId( "GO:0004930" ) ) ) {
return false;
}
- if ( !m4.getKey().equals( new DomainId( "7tm_2" ) ) ) {
+ if ( !m4.getKey().equals( "7tm_2" ) ) {
return false;
}
if ( !m4.getValue().equals( new GoId( "GO:0016020" ) ) ) {
return false;
}
- if ( !m5.getKey().equals( new DomainId( "7tm_3" ) ) ) {
+ if ( !m5.getKey().equals( "7tm_3" ) ) {
return false;
}
if ( !m5.getValue().equals( new GoId( "GO:0008067" ) ) ) {
return false;
}
- if ( !m424.getKey().equals( new DomainId( "OMPdecase" ) ) ) {
+ if ( !m424.getKey().equals( "OMPdecase" ) ) {
return false;
}
if ( !m424.getValue().equals( new GoId( "GO:0006207" ) ) ) {
return false;
}
- if ( !m425.getKey().equals( new DomainId( "Bac_DNA_binding" ) ) ) {
+ if ( !m425.getKey().equals( "Bac_DNA_binding" ) ) {
return false;
}
if ( !m425.getValue().equals( new GoId( "GO:0003677" ) ) ) {