moved to: https://sites.google.com/site/cmzmasek/home/software/forester

[jalview.git] / forester / java / src / org / forester / io / parsers / GeneralMsaParser.java

diff --git a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
index 4b7e920..507ae1f 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
+++ b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
@@ -6,7 +6,7 @@
 // Copyright (C) 2010 Christian M Zmasek
 // Copyright (C) 2010 Sanford-Burnham Medical Research Institute
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -16,13 +16,13 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 
@@ -48,7 +48,7 @@ public final class GeneralMsaParser {
     private static final Pattern NAME_SEQ_PATTERN          = Pattern.compile( "(\\S+)\\s+(\\S+)\\s*" );
     private static final Pattern INDENTED_SEQ_PATTERN      = Pattern.compile( "\\s+(\\S+)\\s*" );
     private static final Pattern NON_INDENTED_SEQ_PATTERN  = Pattern.compile( "(\\S+).*" );
-    private static final Pattern PROBCONS_REGEX            = Pattern.compile( "^CLUSTAL\\s" );
+    private static final Pattern PROBCONS_REGEX            = Pattern.compile( "^CLUSTAL" );
     private static final Pattern MUSCLE_REGEX              = Pattern.compile( "^MUSCLE\\s\\(" );
     private static final Pattern CLUSTAL_REGEX             = Pattern.compile( "^PROBCONS\\s" );
     private static final Pattern ANYTHING_REGEX            = Pattern.compile( "[\\d\\s]+" );