JAL-1953 equals and hashCode now takes node ID in account

[jalview.git] / forester / java / src / org / forester / io / parsers / HmmscanPerDomainTableParser.java

diff --git a/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java b/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
index c75e521..fbaf157 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
+++ b/forester/java/src/org/forester/io/parsers/HmmscanPerDomainTableParser.java
@@ -426,12 +426,16 @@ public final class HmmscanPerDomainTableParser {
                         throw new IOException( "more than one protein named [" + query + "]" );
                     }
                 }
+                final String fail_query = prev_query; //TODO
                 prev_query = query;
                 prev_qlen = qlen;
                 prev_queries.add( query );
                 if ( ( current_protein != null ) && ( current_protein.getProteinDomains().size() > 0 ) ) {
                     addProtein( proteins, current_protein );
                 }
+                else  {
+                    System.out.println(fail_query ); //TODO
+                }
                 if ( getReturnType() == ReturnType.UNORDERED_PROTEIN_DOMAIN_COLLECTION_PER_PROTEIN ) {
                     current_protein = new BasicProtein( query, getSpecies(), qlen );
                 }