"rio" work

[jalview.git] / forester / java / src / org / forester / io / parsers / SymmetricalDistanceMatrixParser.java

diff --git a/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java b/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java
index b9df246..538257c 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java
+++ b/forester/java/src/org/forester/io/parsers/SymmetricalDistanceMatrixParser.java
@@ -6,7 +6,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -16,7 +16,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -98,7 +98,12 @@ public class SymmetricalDistanceMatrixParser {
 
     public DistanceMatrix[] parse( final Object source ) throws IOException {
         reset();
-        final List<BasicTable<String>> tables = BasicTableParser.parse( source, VALUE_SEPARATOR, false, COMMENT, true );
+        final List<BasicTable<String>> tables = BasicTableParser.parse( source,
+                                                                        VALUE_SEPARATOR,
+                                                                        false,
+                                                                        false,
+                                                                        COMMENT,
+                                                                        true );
         final DistanceMatrix[] distance_matrices = new DistanceMatrix[ tables.size() ];
         int i = 0;
         for( final BasicTable<String> table : tables ) {