inprogress

[jalview.git] / forester / java / src / org / forester / io / parsers / phyloxml / PhyloXmlMapping.java

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
index 04a8cb6..4659fc2 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
@@ -7,7 +7,7 @@
 // Copyright (C) 2000-2001 Washington University School of Medicine
 // and Howard Hughes Medical Institute
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -17,7 +17,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -42,6 +42,7 @@ public final class PhyloXmlMapping {
     public static final String PHYLOGENY_TYPE_ATTR                                 = "type";
     public static final String CLADE                                               = "clade";
     public static final String NODE_NAME                                           = "name";
+    public static final String NODE_COLLAPSE                                       = "collapse";
     public static final String SEQUENCE                                            = "sequence";
     public static final String SEQUENCE_NAME                                       = "name";
     public static final String SEQUENCE_SYMBOL                                     = "symbol";
@@ -73,6 +74,7 @@ public final class PhyloXmlMapping {
     public static final String BINARY_CHARACTERS_LOST_COUNT_ATTR                   = "lost_count";
     public static final String BRANCH_LENGTH                                       = "branch_length";
     public static final String CONFIDENCE                                          = "confidence";
+    public static final String CONFIDENCE_SD_ATTR                                  = "stddev";
     public static final String CONFIDENCE_TYPE_ATTR                                = "type";
     public static final String COLOR                                               = "color";
     public static final String COLOR_RED                                           = "red";