inprogress

[jalview.git] / forester / java / src / org / forester / io / parsers / phyloxml / PhyloXmlUtil.java

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java
index f7aa962..e585cb3 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java
@@ -38,7 +38,8 @@ public final class PhyloXmlUtil {
     public static final String       OTHER                                      = "other";
     public static final String       UNKNOWN                                    = "unknown";
     public final static Pattern      SEQUENCE_SYMBOL_PATTERN                    = Pattern.compile( "\\S{1,20}" );
-    public final static Pattern      TAXOMONY_CODE_PATTERN                      = ParserUtils.TAXOMONY_CODE_PATTERN_1;
+    public final static Pattern      TAXOMONY_CODE_PATTERN                      = Pattern
+                                                                                        .compile( ParserUtils.TAX_CODE );
     public final static Pattern      LIT_REF_DOI_PATTERN                        = Pattern
                                                                                         .compile( "[a-zA-Z0-9_\\.]+\\S+" );
     public final static Set<String>  SEQUENCE_TYPES                             = new HashSet<String>();