iterating nh parser

[jalview.git] / forester / java / src / org / forester / io / parsers / phyloxml / XmlElement.java

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java b/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java
index 442c937..e0cc08c 100644 (file)
--- a/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/XmlElement.java
@@ -5,7 +5,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -15,13 +15,13 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 
@@ -136,25 +136,25 @@ public class XmlElement {
         return b;
     }
 
-    public double getValueAsDouble() throws PhylogenyParserException {
+    public double getValueAsDouble() throws PhyloXmlDataFormatException {
         double d = 0.0;
         try {
             d = Double.parseDouble( getValueAsString() );
         }
         catch ( final NumberFormatException ex ) {
-            throw new PhylogenyParserException( "attempt to parse [" + getValueAsString() + "] into double, in "
+            throw new PhyloXmlDataFormatException( "attempt to parse [" + getValueAsString() + "] into double, in "
                     + toString() );
         }
         return d;
     }
 
-    public int getValueAsInt() throws PhylogenyParserException {
+    public int getValueAsInt() throws PhyloXmlDataFormatException {
         int i = 0;
         try {
             i = Integer.parseInt( getValueAsString() );
         }
         catch ( final NumberFormatException ex ) {
-            throw new PhylogenyParserException( "attempt to parse [" + getValueAsString() + "] into integer, in "
+            throw new PhyloXmlDataFormatException( "attempt to parse [" + getValueAsString() + "] into integer, in "
                     + toString() );
         }
         return i;