import java.io.Writer;
import java.util.List;
-import org.forester.sequence.BasicSequence;
import org.forester.sequence.Sequence;
import org.forester.util.ForesterUtil;
FASTA;
}
- public static void main( final String[] args ) {
- final Sequence s = BasicSequence.createAaSequence( "name", "abcdefghiiklmnap" );
- System.out.println( s.toString() );
- System.out.println( SequenceWriter.toFasta( s, 0 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 5 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 8 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 4 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 3 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 2 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 1 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 100 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 15 ).toString() );
- System.out.println( SequenceWriter.toFasta( s, 16 ).toString() );
- }
-
public static StringBuilder toFasta( final Sequence seq, final int width ) {
final StringBuilder sb = new StringBuilder();
sb.append( ">" );