import java.io.Writer;
import java.util.List;
-import org.forester.sequence.Sequence;
-import org.forester.sequence.Sequence.TYPE;
+import org.forester.sequence.MolecularSequence;
+import org.forester.sequence.MolecularSequence.TYPE;
public interface Msa {
public List<Character> getColumnAt( int col );
- public Sequence getSequence( final String id );
+ public MolecularSequence getSequence( final String id );
- public Sequence getSequence( final int row );
+ public MolecularSequence getSequence( final int row );
- public List<Sequence> asSequenceList();
+ public List<MolecularSequence> asSequenceList();
public StringBuffer getSequenceAsString( int row );