import java.io.Writer;
import java.util.List;
+import org.forester.sequence.Sequence;
import org.forester.sequence.Sequence.TYPE;
public interface Msa {
- public Object getIdentifier( int row );
+ public String getIdentifier( int row );
- public void setIdentifier( int row, Object identifier );
+ public void setIdentifier( int row, String identifier );
public int getLength();
public List<Character> getColumnAt( int col );
+ public Sequence getSequence( final String id );
+
+ public Sequence getSequence( final int row );
+
+ public List<Sequence> asSequenceList();
+
public StringBuffer getSequenceAsString( int row );
public abstract TYPE getType();