inprogress

[jalview.git] / forester / java / src / org / forester / msa / MsaMethods.java

diff --git a/forester/java/src/org/forester/msa/MsaMethods.java b/forester/java/src/org/forester/msa/MsaMethods.java
index 25330e0..1a94b74 100644 (file)
--- a/forester/java/src/org/forester/msa/MsaMethods.java
+++ b/forester/java/src/org/forester/msa/MsaMethods.java
@@ -168,9 +168,9 @@ public final class MsaMethods {
     }
 
     final public static DescriptiveStatistics calculateEffectiveLengthStatistics( final Msa msa ) {
-        DescriptiveStatistics stats = new BasicDescriptiveStatistics();
+        final DescriptiveStatistics stats = new BasicDescriptiveStatistics();
         for( int row = 0; row < msa.getNumberOfSequences(); ++row ) {
-            Sequence s = msa.getSequence( row );
+            final Sequence s = msa.getSequence( row );
             stats.addValue( s.getLength() - s.getNumberOfGapResidues() );
         }
         return stats;