_ignored_seqs_ids = new ArrayList<String>();
}
- public static final DescriptiveStatistics calcNumberOfGapsPer100Stats( final Msa msa ) {
+ public static final DescriptiveStatistics calcNumberOfGapsStats( final Msa msa ) {
final int[] gaps = calcNumberOfGapsInMsa( msa );
final DescriptiveStatistics stats = new BasicDescriptiveStatistics();
- final double n = 100.0 / msa.getLength();
for( final int gap : gaps ) {
- stats.addValue( n * gap );
+ stats.addValue( gap );
}
return stats;
}