git://source.jalview.org
/
jalview.git
/ blobdiff
commit
grep
author
committer
pickaxe
?
search:
re
summary
|
shortlog
|
log
|
commit
|
commitdiff
|
tree
raw
| inline |
side by side
cleanup
[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
msa
/
MsaMethods.java
diff --git
a/forester/java/src/org/forester/msa/MsaMethods.java
b/forester/java/src/org/forester/msa/MsaMethods.java
index
ff8342c
..
b05e837
100644
(file)
--- a/
forester/java/src/org/forester/msa/MsaMethods.java
+++ b/
forester/java/src/org/forester/msa/MsaMethods.java
@@
-65,7
+65,7
@@
public final class MsaMethods {
public static int calcGapSumPerColumn( final Msa msa, final int col ) {
int gap_rows = 0;
for( int j = 0; j < msa.getNumberOfSequences(); ++j ) {
- if ( msa.getResidueAt( j, col ) == Sequence.GAP ) {
+ if ( msa.isGapAt( j, col ) ) {
gap_rows++;
}
}