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[jalview.git]
/
forester
/
java
/
src
/
org
/
forester
/
msa
/
MsaMethods.java
diff --git
a/forester/java/src/org/forester/msa/MsaMethods.java
b/forester/java/src/org/forester/msa/MsaMethods.java
index
ff8342c
..
b05e837
100644
(file)
--- a/
forester/java/src/org/forester/msa/MsaMethods.java
+++ b/
forester/java/src/org/forester/msa/MsaMethods.java
@@
-65,7
+65,7
@@
public final class MsaMethods {
public static int calcGapSumPerColumn( final Msa msa, final int col ) {
int gap_rows = 0;
for( int j = 0; j < msa.getNumberOfSequences(); ++j ) {
- if ( msa.getResidueAt( j, col ) == Sequence.GAP ) {
+ if ( msa.isGapAt( j, col ) ) {
gap_rows++;
}
}