// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
return score_contribution;
}
+ @Override
public void calculateScoreForExternalNode( final SortedMap<PhylogenyNode, Double> external_node_scores,
final Phylogeny phylogeny,
final PhylogenyNode external_node,
}
}
+ @Override
public String getDesciption() {
return "sum of 1/branch-segment-sum";
}
+ @Override
public double getNormalizationFactor( final Phylogeny phylogeny ) {
return ( 1.0 / phylogeny.getNumberOfExternalNodes() );
}