in progress

[jalview.git] / forester / java / src / org / forester / phylogeny / PhylogenyMethods.java

diff --git a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
index 806f031..1f872cf 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
+++ b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
@@ -1516,7 +1516,7 @@ public class PhylogenyMethods {
         }
     }
 
-    final static public void transferInternalNodeNamesToConfidence( final Phylogeny phy ) {
+    final static public void transferInternalNodeNamesToConfidence( final Phylogeny phy, final String confidence_type ) {
         final PhylogenyNodeIterator it = phy.iteratorPostorder();
         while ( it.hasNext() ) {
             final PhylogenyNode n = it.next();
@@ -1530,7 +1530,7 @@ public class PhylogenyMethods {
                         d = -1.0;
                     }
                     if ( d >= 0.0 ) {
-                        n.getBranchData().addConfidence( new Confidence( d, "" ) );
+                        n.getBranchData().addConfidence( new Confidence( d, confidence_type ) );
                         n.setName( "" );
                     }
                 }