more test for isDuplication() and isSpecation() added (phyloXML encoded

[jalview.git] / forester / java / src / org / forester / phylogeny / PhylogenyMethods.java

diff --git a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
index 3616a89..c3fbc95 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
+++ b/forester/java/src/org/forester/phylogeny/PhylogenyMethods.java
@@ -107,7 +107,7 @@ public class PhylogenyMethods {
         return could_extract;\r
     }\r
 \r
-    public static DescriptiveStatistics calculatBranchLengthStatistics( final Phylogeny phy ) {\r
+    public static DescriptiveStatistics calculateBranchLengthStatistics( final Phylogeny phy ) {\r
         final DescriptiveStatistics stats = new BasicDescriptiveStatistics();\r
         for( final PhylogenyNodeIterator iter = phy.iteratorPreorder(); iter.hasNext(); ) {\r
             final PhylogenyNode n = iter.next();\r
@@ -118,7 +118,7 @@ public class PhylogenyMethods {
         return stats;\r
     }\r
 \r
-    public static List<DescriptiveStatistics> calculatConfidenceStatistics( final Phylogeny phy ) {\r
+    public static List<DescriptiveStatistics> calculateConfidenceStatistics( final Phylogeny phy ) {\r
         final List<DescriptiveStatistics> stats = new ArrayList<DescriptiveStatistics>();\r
         for( final PhylogenyNodeIterator iter = phy.iteratorPreorder(); iter.hasNext(); ) {\r
             final PhylogenyNode n = iter.next();\r
@@ -305,7 +305,7 @@ public class PhylogenyMethods {
         return x;\r
     }\r
 \r
-    public static DescriptiveStatistics calculatNumberOfDescendantsPerNodeStatistics( final Phylogeny phy ) {\r
+    public static DescriptiveStatistics calculateNumberOfDescendantsPerNodeStatistics( final Phylogeny phy ) {\r
         final DescriptiveStatistics stats = new BasicDescriptiveStatistics();\r
         for( final PhylogenyNodeIterator iter = phy.iteratorPreorder(); iter.hasNext(); ) {\r
             final PhylogenyNode n = iter.next();\r