return could_extract;\r
}\r
\r
- public static DescriptiveStatistics calculatBranchLengthStatistics( final Phylogeny phy ) {\r
+ public static DescriptiveStatistics calculateBranchLengthStatistics( final Phylogeny phy ) {\r
final DescriptiveStatistics stats = new BasicDescriptiveStatistics();\r
for( final PhylogenyNodeIterator iter = phy.iteratorPreorder(); iter.hasNext(); ) {\r
final PhylogenyNode n = iter.next();\r
return stats;\r
}\r
\r
- public static List<DescriptiveStatistics> calculatConfidenceStatistics( final Phylogeny phy ) {\r
+ public static List<DescriptiveStatistics> calculateConfidenceStatistics( final Phylogeny phy ) {\r
final List<DescriptiveStatistics> stats = new ArrayList<DescriptiveStatistics>();\r
for( final PhylogenyNodeIterator iter = phy.iteratorPreorder(); iter.hasNext(); ) {\r
final PhylogenyNode n = iter.next();\r
return x;\r
}\r
\r
- public static DescriptiveStatistics calculatNumberOfDescendantsPerNodeStatistics( final Phylogeny phy ) {\r
+ public static DescriptiveStatistics calculateNumberOfDescendantsPerNodeStatistics( final Phylogeny phy ) {\r
final DescriptiveStatistics stats = new BasicDescriptiveStatistics();\r
for( final PhylogenyNodeIterator iter = phy.iteratorPreorder(); iter.hasNext(); ) {\r
final PhylogenyNode n = iter.next();\r
final PhylogenyNode node = iter.next();\r
boolean all_matched = true;\r
for( String query : queries ) {\r
+ if ( query == null ) {\r
+ continue;\r
+ }\r
+ query = query.trim();\r
NDF ndf = null;\r
if ( ( query.length() > 2 ) && ( query.indexOf( ":" ) == 2 ) ) {\r
ndf = NDF.fromString( query );\r