// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.phylogeny;
public static PhylogenyNode createInstanceFromNhxString( final String nhx ) throws NHXFormatException,
PhyloXmlDataFormatException {
- return new PhylogenyNode( nhx, PhylogenyMethods.TAXONOMY_EXTRACTION.NO, false );
+ return new PhylogenyNode( nhx, NHXParser.TAXONOMY_EXTRACTION.NO, false );
}
public static PhylogenyNode createInstanceFromNhxString( final String nhx,
- final PhylogenyMethods.TAXONOMY_EXTRACTION taxonomy_extraction )
+ final NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction )
throws NHXFormatException, PhyloXmlDataFormatException {
return new PhylogenyNode( nhx, taxonomy_extraction, false );
}
public static PhylogenyNode createInstanceFromNhxString( final String nhx,
- final PhylogenyMethods.TAXONOMY_EXTRACTION taxonomy_extraction,
+ final NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction,
final boolean replace_underscores )
throws NHXFormatException, PhyloXmlDataFormatException {
return new PhylogenyNode( nhx, taxonomy_extraction, replace_underscores );
}
private PhylogenyNode( final String nhx,
- final PhylogenyMethods.TAXONOMY_EXTRACTION taxonomy_extraction,
+ final NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction,
final boolean replace_underscores ) throws NHXFormatException, PhyloXmlDataFormatException {
// init();
NHXParser.parseNHX( nhx, this, taxonomy_extraction, replace_underscores );