private PhylogenyNode( final String nhx,
final NHXParser.TAXONOMY_EXTRACTION taxonomy_extraction,
final boolean replace_underscores ) throws NHXFormatException, PhyloXmlDataFormatException {
- NHXParser.parseNHX( nhx, this, taxonomy_extraction, replace_underscores );
+ NHXParser.parseNHX( nhx, this, taxonomy_extraction, replace_underscores, false );
setId( PhylogenyNode.getNodeCount() );
PhylogenyNode.increaseNodeCount();
setSumExtNodes( 1 ); // For ext node, this number is 1 (not 0!!).