// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.phylogeny.data;
import java.io.IOException;
import java.io.Writer;
+import java.text.DecimalFormat;
+import java.text.DecimalFormatSymbols;
+import java.text.NumberFormat;
import org.forester.io.parsers.nhx.NHXtags;
import org.forester.io.parsers.phyloxml.PhyloXmlMapping;
public class Confidence implements PhylogenyData, Comparable<Confidence> {
- public final static int CONFIDENCE_DEFAULT_VALUE = -9999;
- private double _value;
- private double _sd;
- private String _type;
+ public final static int CONFIDENCE_DEFAULT_VALUE = -9999;
+ private double _value;
+ private double _sd;
+ private String _type;
+ public final static NumberFormat FORMATTER;
+ static {
+ final DecimalFormatSymbols dfs = new DecimalFormatSymbols();
+ dfs.setDecimalSeparator( '.' );
+ FORMATTER = new DecimalFormat( "#.#########", dfs );
+ FORMATTER.setMaximumFractionDigits( PhyloXmlUtil.ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT );
+ }
public Confidence() {
init();
public StringBuffer toNHX() {
final StringBuffer sb = new StringBuffer();
sb.append( NHXtags.SUPPORT );
- sb.append( getValue() );
+ sb.append( FORMATTER.format( ForesterUtil.round( getValue(),
+ PhyloXmlUtil.ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT ) ) );
return sb;
}
PhylogenyDataUtil
.appendElement( writer,
PhyloXmlMapping.CONFIDENCE,
- String.valueOf( ForesterUtil
+ FORMATTER.format( ForesterUtil
.round( getValue(), PhyloXmlUtil.ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT ) ),
PhyloXmlMapping.CONFIDENCE_TYPE_ATTR,
ForesterUtil.isEmpty( getType() ) ? "unknown" : getType(),
PhylogenyDataUtil
.appendElement( writer,
PhyloXmlMapping.CONFIDENCE,
- String.valueOf( ForesterUtil
+ FORMATTER.format( ForesterUtil
.round( getValue(), PhyloXmlUtil.ROUNDING_DIGITS_FOR_PHYLOXML_DOUBLE_OUTPUT ) ),
PhyloXmlMapping.CONFIDENCE_TYPE_ATTR,
ForesterUtil.isEmpty( getType() ) ? "unknown" : getType() );