// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
_domains.put( key, pd );
}
+ @Override
public StringBuffer asSimpleText() {
final StringBuffer sb = new StringBuffer();
for( int i = 0; i < getDomains().size(); ++i ) {
return sb;
}
+ @Override
public StringBuffer asText() {
final StringBuffer sb = new StringBuffer();
for( int i = 0; i < getDomains().size(); ++i ) {
return sb;
}
+ @Override
public PhylogenyData copy() {
final List<PhylogenyData> domains = new ArrayList<PhylogenyData>( getDomains().size() );
for( int i = 0; i < getDomains().size(); ++i ) {
*
*
*/
+ @Override
public boolean isEqual( final PhylogenyData domain_architecture ) {
if ( domain_architecture == null ) {
return false;
_total_length = total_length;
}
+ @Override
public StringBuffer toNHX() {
final StringBuffer sb = new StringBuffer();
sb.append( ":" );
return sb;
}
+ @Override
public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException {
writer.write( ForesterUtil.LINE_SEPARATOR );
writer.write( indentation );