blast

[jalview.git] / forester / java / src / org / forester / phylogeny / data / ProteinDomain.java

diff --git a/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java b/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
index 81155ff..5bb947a 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
+++ b/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
@@ -5,7 +5,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -15,7 +15,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -64,10 +64,12 @@ public class ProteinDomain implements PhylogenyData {
         _confidence = confidence;
     }
 
+    @Override
     public StringBuffer asSimpleText() {
         return new StringBuffer( getName() );
     }
 
+    @Override
     public StringBuffer asText() {
         final StringBuffer sb = new StringBuffer( getName() );
         sb.append( " [" );
@@ -84,6 +86,7 @@ public class ProteinDomain implements PhylogenyData {
         return sb;
     }
 
+    @Override
     public PhylogenyData copy() {
         if ( getId() == null ) {
             return new ProteinDomain( getName(), getFrom(), getTo(), getConfidence() );
@@ -115,6 +118,7 @@ public class ProteinDomain implements PhylogenyData {
         return _to;
     }
 
+    @Override
     public boolean isEqual( final PhylogenyData protein_domain ) {
         if ( protein_domain == null ) {
             return false;
@@ -131,10 +135,12 @@ public class ProteinDomain implements PhylogenyData {
         return true;
     }
 
+    @Override
     public StringBuffer toNHX() {
         throw new UnsupportedOperationException();
     }
 
+    @Override
     public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException {
         writer.write( ForesterUtil.LINE_SEPARATOR );
         writer.write( indentation );