Added getValues and write to DistanceMatrix interface for broader use

[jalview.git] / forester / java / src / org / forester / phylogeny / data / ProteinDomain.java

diff --git a/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java b/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
index 3adcdfd..921ff25 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
+++ b/forester/java/src/org/forester/phylogeny/data/ProteinDomain.java
@@ -33,7 +33,7 @@ import org.forester.util.ForesterUtil;
 
 public class ProteinDomain implements PhylogenyData {
 
-    final public static double CONFIDENCE_DEFAULT = 0.0;
+    final public static double CONFIDENCE_DEFAULT = -1;
     final public static String IDENTIFIER_DEFAULT = "";
     final private String       _name;
     final private int          _from;
@@ -78,7 +78,7 @@ public class ProteinDomain implements PhylogenyData {
             sb.append( " " );
             sb.append( getId() );
         }
-        if ( getConfidence() != CONFIDENCE_DEFAULT ) {
+        if ( getConfidence() >= 0 ) {
             sb.append( " " );
             sb.append( getConfidence() );
         }