// Copyright (C) 2008-2009 Christian M. Zmasek
// Copyright (C) 2008-2009 Burnham Institute for Medical Research
// All rights reserved
-//
+//
// This library is free software; you can redistribute it and/or
// modify it under the terms of the GNU Lesser General Public
// License as published by the Free Software Foundation; either
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
// Lesser General Public License for more details.
-//
+//
// You should have received a copy of the GNU Lesser General Public
// License along with this library; if not, write to the Free Software
// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
_doi = doi;
}
+ @Override
public StringBuffer asSimpleText() {
return new StringBuffer( getDescription() );
}
+ @Override
public StringBuffer asText() {
final StringBuffer sb = new StringBuffer();
if ( !ForesterUtil.isEmpty( getDoi() ) ) {
return sb;
}
+ @Override
public PhylogenyData copy() {
return new Reference( getDescription(), getDoi() );
}
return _desc;
}
+ @Override
public boolean isEqual( final PhylogenyData data ) {
if ( ( data == null ) || ( getDescription() == null ) ) {
return false;
&& ( ( Reference ) data ).getDoi().equals( getDoi() );
}
- public void setDoi( final String doi ) {
+ public void setDoi( final String doi ) throws PhyloXmlDataFormatException {
if ( !ForesterUtil.isEmpty( doi ) && !PhyloXmlUtil.LIT_REF_DOI_PATTERN.matcher( doi ).matches() ) {
throw new PhyloXmlDataFormatException( "illegal doi: [" + doi + "]" );
}
_desc = value;
}
+ @Override
public StringBuffer toNHX() {
throw new UnsupportedOperationException();
}
+ @Override
public void toPhyloXML( final Writer writer, final int level, final String indentation ) throws IOException {
writer.write( ForesterUtil.LINE_SEPARATOR );
writer.write( indentation );