in progress...

[jalview.git] / forester / java / src / org / forester / phylogeny / factories / PhylogenyFactory.java

diff --git a/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java b/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java
index 565e31a..cf7487d 100644 (file)
--- a/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java
+++ b/forester/java/src/org/forester/phylogeny/factories/PhylogenyFactory.java
@@ -21,35 +21,26 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.phylogeny.factories;
 
 import java.io.IOException;
-import java.util.List;
 
 import org.forester.phylogeny.Phylogeny;
 
 /*
  * Interface for Phylogeny factories.
- * 
+ *
  * @author Christian M. Zmasek
  */
 public interface PhylogenyFactory {
 
     /**
-     * This must be implemented in such a way that it returns an empty
-     * Phylogeny.
-     * 
-     * @return an empty Phylogeny
-     */
-    public Phylogeny create();
-
-    /**
      * This must create a Phylogeny from source (e.g. an XML file, an alignment,
      * pairwise distances) by using creator (e.g. an XML file parser, an
      * algorithm implementation).
-     * 
+     *
      * @param source
      *            a source to create a Phylogeny from
      * @param creator
@@ -58,20 +49,4 @@ public interface PhylogenyFactory {
      * @throws IOException
      */
     public Phylogeny[] create( Object source, Object creator ) throws IOException;
-
-    /**
-     * This must create a Phylogeny from source (e.g. an XML file, an alignment,
-     * pairwise distances) by using creator (e.g. an XML file parser, an
-     * algorithm implementation) with parameters listed in parameters.
-     * 
-     * @param source
-     *            a source to create a Phylogeny from
-     * @param creator
-     *            a means to create a Phylogeny
-     * @param parameters
-     *            a List of parameters for Phylogeny creation
-     * @return a Phylogeny[] based on argument source
-     * @throws IOException
-     */
-    public Phylogeny[] create( Object source, Object creator, List<Object> parameters ) throws IOException;
-} // PhylogenyFactory
+}