// Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
//
// Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
package org.forester.protein;
public static final String SEPARATOR = "=";
- public DomainId getId0();
+ public String getId0();
- public DomainId getId1();
+ public String getId1();
- public abstract StringBuffer toGraphDescribingLanguage( final OutputFormat format,
- final String node_attribute,
- String edge_attribute );
+ short getId0Code();
- /**
- * This has to return a String representation
- * in the following format:
- * id0 - id1
- *
- * @return a String representation in the form id0 - id1
- */
- @Override
- public String toString();
+ short getId1Code();
+
+ public StringBuffer toGraphDescribingLanguage( final OutputFormat format,
+ final String node_attribute,
+ String edge_attribute );
public static enum DomainCombinationType {
BASIC, DIRECTED, DIRECTED_ADJACTANT;