in progress...

[jalview.git] / forester / java / src / org / forester / protein / Domain.java

diff --git a/forester/java/src/org/forester/protein/Domain.java b/forester/java/src/org/forester/protein/Domain.java
index ef2e65a..dcc41fb 100644 (file)
--- a/forester/java/src/org/forester/protein/Domain.java
+++ b/forester/java/src/org/forester/protein/Domain.java
@@ -22,35 +22,31 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.protein;
 
-import org.forester.go.GoId;
-
 public interface Domain extends Comparable<Domain> {
 
-    public void addGoId( GoId go_id );
+    public String getDomainId();
 
-    public DomainId getDomainId();
+    public int getLength();
 
     public int getFrom();
 
-    public GoId getGoId( int i );
-
     public short getNumber();
 
-    public int getNumberOfGoIds();
-
     public double getPerDomainEvalue();
 
     public double getPerDomainScore();
 
-    public double getPerSequenceEvalue();
-
-    public double getPerSequenceScore();
-
     public int getTo();
 
     public short getTotalCount();
+
+    short getHmmLen();
+
+    short getHmmFrom();
+
+    short getHmmTo();
 }
\ No newline at end of file