added transfer of taxonomy for GSDI

[jalview.git] / forester / java / src / org / forester / sdi / GSDIR.java

diff --git a/forester/java/src/org/forester/sdi/GSDIR.java b/forester/java/src/org/forester/sdi/GSDIR.java
index 3615f31..6b170d9 100644 (file)
--- a/forester/java/src/org/forester/sdi/GSDIR.java
+++ b/forester/java/src/org/forester/sdi/GSDIR.java
@@ -80,13 +80,7 @@ public class GSDIR implements GSDII {
         for( final PhylogenyBranch branch : gene_tree_branches_post_order ) {\r
             reRoot( branch, gene_tree );\r
             PhylogenyMethods.preOrderReId( species_tree );\r
-            //TEST, remove later\r
-            //            for( final PhylogenyNodeIterator it = gene_tree.iteratorPostorder(); it.hasNext(); ) {\r
-            //                final PhylogenyNode g = it.next();\r
-            //                if ( g.isInternal() ) {\r
-            //                    g.setLink( null );\r
-            //                }\r
-            //            }\r
+          \r
             final GSDIsummaryResult gsdi_result = GSDI.geneTreePostOrderTraversal( gene_tree,\r
                                                                                    true,\r
                                                                                    min_duplications_sum );\r