phylotastic hackathon at NESCENT 120607

[jalview.git] / forester / java / src / org / forester / sdi / ORcount.java

diff --git a/forester/java/src/org/forester/sdi/ORcount.java b/forester/java/src/org/forester/sdi/ORcount.java
index 4271890..567a67c 100644 (file)
--- a/forester/java/src/org/forester/sdi/ORcount.java
+++ b/forester/java/src/org/forester/sdi/ORcount.java
@@ -7,7 +7,7 @@
 // Copyright (C) 2000-2001 Washington University School of Medicine
 // and Howard Hughes Medical Institute
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -17,7 +17,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -33,6 +33,7 @@ import java.util.HashMap;
 import java.util.List;
 
 import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
 import org.forester.phylogeny.Phylogeny;
 import org.forester.phylogeny.PhylogenyMethods;
 import org.forester.phylogeny.PhylogenyNode;
@@ -350,7 +351,7 @@ public class ORcount {
         for( int i = 0; i < trees.length; ++i ) {
             try {
                 System.out.println( "Reading tree #" + i + "  [" + args[ i ] + "]" );
-                final PhylogenyParser pp = ForesterUtil.createParserDependingOnFileType( new File( args[ i ] ), true );
+                final PhylogenyParser pp = ParserUtils.createParserDependingOnFileType( new File( args[ i ] ), true );
                 trees[ i ] = factory.create( new File( args[ i ] ), pp )[ 0 ];
             }
             catch ( final Exception e ) {