refactoring

[jalview.git] / forester / java / src / org / forester / sdi / SDIR.java

diff --git a/forester/java/src/org/forester/sdi/SDIR.java b/forester/java/src/org/forester/sdi/SDIR.java
index f75f6f8..c9224da 100644 (file)
--- a/forester/java/src/org/forester/sdi/SDIR.java
+++ b/forester/java/src/org/forester/sdi/SDIR.java
@@ -7,7 +7,7 @@
 // Copyright (C) 2000-2001 Washington University School of Medicine
 // and Howard Hughes Medical Institute
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -17,7 +17,7 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
@@ -212,6 +212,7 @@ public class SDIR {
      *            Array) must be no lower than 1
      * @return array of rooted Trees with duplication vs. speciation assigned if
      *         return_trees is set to true, null otherwise
+     * @throws SDIException 
      */
     public Phylogeny[] infer( final Phylogeny gene_tree,
                               final Phylogeny species_tree,
@@ -219,7 +220,7 @@ public class SDIR {
                               boolean minimize_sum_of_dup,
                               final boolean minimize_height,
                               final boolean return_trees,
-                              int max_trees_to_return ) {
+                              int max_trees_to_return ) throws SDIException {
         init();
         SDIse sdise = null;
         final ArrayList<Phylogeny> trees = new ArrayList<Phylogeny>();