prev_root_c2 = prev_root.getChildNode2();
prev_root_was_dup = prev_root.isDuplication();
final PhylogenyBranch current_branch = branches.get( j );
- g.reRoot( current_branch );
+ GSDIR.reRoot( current_branch, g );
if ( minimize_mapping_cost || minimize_sum_of_dup ) {
duplications = sdise.updateM( prev_root_was_dup, prev_root_c1, prev_root_c2 );
}